Removal of phosphoglycolate in hyperthermophilic archaea

• 成果类型: Article
• 署名作者: Michimori, Yuta; Izaki, Rikihisa; Su, Yu; Fukuyama, Yuto; Shimamura, Shigeru; Nishimura, Karin; Miwa, Yuya; Hamakita, Sotaro; Shimosaka, Takahiro; Makino, Yuki; Takeno, Ryo; Sato, Takaaki; Beppu, Haruki; Cann, Isaac; Kanai, Tamotsu; Nunoura, Takuro; Atomi, Haruyuki
• 署名单位: Kyoto University; Kyoto University; Japan Agency for Marine-Earth Science & Technology (JAMSTEC); Japan Agency for Marine-Earth Science & Technology (JAMSTEC); Kyoto University; University of Illinois System; University of Illinois Urbana-Champaign
• 刊物名称: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
• ISSN/ISSBN: 0027-15180
• DOI: 10.1073/pnas.2311390121
• 发表日期: 2024-04-08
• 关键词: glyoxylate aminotransferase; thermococcus-kodakaraensis; glycolate oxidase; PATHWAY; reductase; oxygen; gene; carboxylase/oxygenase; cyanobacteria; phosphatase

摘要

Many organisms that utilize the Calvin-Benson-Bassham (CBB) cycle for autotrophic growth harbor metabolic pathways to remove and/or salvage 2- phosphoglycolate, the product of the oxygenase activity of ribulose-1,5- bisphosphate carboxylase/oxygenase (Rubisco). It has been presumed that the occurrence of 2- phosphoglycolate salvage is linked to the CBB cycle, and in particular, the C2 pathway to the CBB cycle and oxygenic photosynthesis. Here, we examined 2- phosphoglycolate salvage in the hyperthermophilic archaeon Thermococcus kodakarensis, an obligate anaerobe that harbors a Rubisco that functions in the pentose bisphosphate pathway. T. kodakarensis harbors enzymes that have the potential to convert 2- phosphoglycolate to glycine and serine, and their genes were identified by biochemical and/or genetic analyses. 2- phosphoglycolate phosphatase activity increased 1.6 - fold when cells were grown under microaerobic conditions compared to anaerobic conditions. Among two candidates, TK1734 encoded a phosphatase specific for 2- phosphoglycolate, and the enzyme was responsible for 80% of the 2- phosphoglycolate phosphatase activity in T. kodakarensis cells. The TK1734 disruption strain displayed growth impairment under microaerobic conditions, which was relieved upon addition of sodium sulfide. In addition, glycolate was detected in the medium when T. kodakarensis was grown under microaerobic conditions. The results suggest that T. kodakarensis removes 2- phosphoglycolate via a phosphatase reaction followed by secretion of glycolate to the medium. As the Rubisco in T. kodakarensis functions in the pentose bisphosphate pathway and not in the CBB cycle, mechanisms to remove 2- phosphoglycolate in this archaeon emerged independent of the CBB cycle.