CRISPR screens and quantitative proteomics reveal remodeling of the aryl hydrocarbon receptor-driven proteome through PARP7 activity

• 成果类型: Article
• 署名作者: Gorelik, Andrii; Paulo, Joao A.; Schroeter, Christina B.; Lad, Melanie; Shurr, Abigail; Mastrokalou, Chara; Siddiqi, Samrah; Suyari, Osamu; Brognard, John; Walter, David; Matthews, Jason; Palmer, Timothy M.; Gygi, Steven P.; Ahel, Ivan
• 署名单位: University of Oxford; Harvard University; Harvard Medical School; Heinrich Heine University Dusseldorf; Heinrich Heine University Dusseldorf; Heinrich Heine University Dusseldorf Hospital; National Institutes of Health (NIH) - USA; NIH National Cancer Institute (NCI); University of Oslo; University of Toronto; University of York - UK; University of Hull
• 刊物名称: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
• ISSN/ISSBN: 0027-8960
• DOI: 10.1073/pnas.2424985122
• 发表日期: 2025-06-17
• 关键词: mono-adp-ribosyltransferase; decoy search strategy; mass-spectrometry; poly(adp-ribose) polymerase; socs3; inhibition; phosphorylation; methylation; suppression; tiparp

摘要

PARP7 is an enzyme that uses donor substrate NAD+ to attach a single ADP-ribose moiety onto proteins related to immunity, transcription, and cell growth and motility. Despite the importance of PARP7 in these processes, PARP7 signaling networks remain underresearched. Here, we used genome-wide CRISPR screens and multiplex quantitative proteomics in distinct lung cancer cell lines treated with a PARP7 inhibitor to better understand PARP7 molecular functions. We find that manipulating the aryl hydrocarbon receptor (AHR) transcriptional activity mediates PARP7 inhibitor sensitivity and triggers robust changes to the AHR-controlled proteome (AHR-ome). One of the striking features of such AHR-ome remodeling was the downregulation of filamins A and B concurrent with the induction of the corresponding E3 ubiquitin ligase ASB2. We also show that suppressor of cytokine signaling 3 (SOCS3) crosstalks to AHR. Inhibition of PARP7 in SOCS3 knockout cells leads to reduced viability compared to wild-type cells treated with a PARP7 inhibitor. Our results reveal signaling interplay between PARP7, AHR, and SOCS3 and establish an invaluable resource to study the role of PARP7 in the regulation of AHR signaling and innate immunity through its ADP-ribosyl transferase activity.