Isolation of a methyl-reducing methanogen outside the Euryarchaeota

• 成果类型: Article
• 署名作者: Wu, Kejia; Zhou, Lei; Tahon, Guillaume; Liu, Laiyan; Li, Jiang; Zhang, Jianchao; Zheng, Fengfeng; Deng, Chengpeng; Han, Wenhao; Bai, Liping; Fu, Lin; Dong, Xiuzhu; Zhang, Chuanlun; Ettema, Thijs J. G.; Sousa, Diana Z.; Cheng, Lei
• 署名单位: Chinese Academy of Agricultural Sciences; Biogas Institute of Ministry of Agriculture, CAAS; Wageningen University & Research; Tianjin University; Southern University of Science & Technology; Chinese Academy of Sciences; Institute of Microbiology, CAS
• 刊物名称: Nature
• ISSN/ISSBN: 0028-4027
• DOI: 10.1038/s41586-024-07728-y
• 发表日期: 2024-08-29
• 关键词: sp nov.; gen. nov.; genome; archaea; diversity; bacteria; tool; metabolism; community; QUALITY

摘要

Methanogenic archaea are main contributors to methane emissions, and have a crucial role in carbon cycling and global warming. Until recently, methanogens were confined to Euryarchaeota, but metagenomic studies revealed the presence of genes encoding the methyl coenzyme M reductase complex in other archaeal clades1-4, thereby opening up the premise that methanogenesis is taxonomically more widespread. Nevertheless, laboratory cultivation of these non-euryarchaeal methanogens was lacking to corroborate their potential methanogenic ability and physiology. Here we report the isolation of a thermophilic archaeon LWZ-6 from an oil field. This archaeon belongs to the class Methanosuratincolia (originally affiliated with 'Candidatus Verstraetearchaeota') in the phylum Thermoproteota. Methanosuratincola petrocarbonis LWZ-6 is a strict hydrogen-dependent methylotrophic methanogen. Although previous metagenomic studies speculated on the fermentative potential of Methanosuratincolia members, strain LWZ-6 does not ferment sugars, peptides or amino acids. Its energy metabolism is linked only to methanogenesis, with methanol and monomethylamine as electron acceptors and hydrogen as an electron donor. Comparative (meta)genome analysis confirmed that hydrogen-dependent methylotrophic methanogenesis is a widespread trait among Methanosuratincolia. Our findings confirm that the diversity of methanogens expands beyond the classical Euryarchaeota and imply the importance of hydrogen-dependent methylotrophic methanogenesis in global methane emissions and carbon cycle. Methanosuratincola petrocarbonis LWZ-6 is a strict hydrogen-dependent methylotrophic methanogen that does not ferment sugars, peptides or amino acids.